Interdisciplinary Stem Cell Training Program at UCSD II
Grant Award Details
Grant Type:
Grant Number:
TG2-01154
Investigator(s):
Award Value:
$7,432,600
Status:
Closed
Progress Reports
Reporting Period:
Year 4
Reporting Period:
Year 5
Reporting Period:
Year 6
Grant Application Details
Application Title:
Interdisciplinary Stem Cell Training Program
Public Abstract:
This proposal describes a Type I stem cell training program including a School of Medicine, a Division of Biological Sciences, a School of Pharmacy and Pharmaceutical Sciences, and a School of Engineering. This program is designed to provide interdisciplinary training in stem cell biology and medicine by taking advantage of the unique interdisciplinary and inter-institutional environment. A major goal is to train a cadre of young basic and clinical scientists and engineers in the use of quantitative and engineering approaches from the physical sciences such as chemistry, computation, and materials science to make novel discoveries in basic and clinical biomedicine. Basic and clinical science and engineering trainees who complete our program will be ideally suited for future careers as academic or industrial scientists investigating stem cell biology and medicine, or using stem cell based methods to develop new therapeutic approaches to human diseases. Our approach will be to build on each trainee’s specialized foundation of basic or clinical knowledge and provide: •Rigorous education in the principles and applications of embryonic and adult stem cell biology from humans and model organisms •Research training in physical, computational, and engineering methods that can be used to harness stem cells to attack problems of basic and clinical science and their uses to develop new understanding and new therapies •Education in the problems and outlooks associated with the ethical, legal, social, and economic issues associated with stem cell biology Our training program will also serve as a catalyst for the integration of our expanding stem cell biology research and training efforts. Our training is structured to take advantage of the [REDACTED] scientific and medical community by engaging in collaboration with three other institutions. We are requesting financial support for 16 trainees (6 graduate, 5 postdoctoral, 5 clinical fellow).
Statement of Benefit to California:
Benefit of this Program to California This program will benefit the people and the state of California by providing high-quality training in the scientific, clinical, social, and ethical aspects of stem cell research to the scientists and clinicians who will develop and apply future therapies in this rapidly emerging field.
Publications
- Proc Natl Acad Sci U S A (2012): ADAR1 promotes malignant progenitor reprogramming in chronic myeloid leukemia. (PubMed: 23275297)
- Genome Res (2010): Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome. (PubMed: 20418490)
- Mol Psychiatry (2015): Altered neuronal network and rescue in a human MECP2 duplication model. (PubMed: 26347316)
- Cell (2013): AMPD2 regulates GTP synthesis and is mutated in a potentially treatable neurodegenerative brainstem disorder. (PubMed: 23911318)
- Nat Commun (2013): Analysis of protein-coding mutations in hiPSCs and their possible role during somatic cell reprogramming. (PubMed: 23340422)
- Nature (2012): APJ acts as a dual receptor in cardiac hypertrophy. (PubMed: 22810587)
- Nat Protoc (2012): Arrayed cellular microenvironments for identifying culture and differentiation conditions for stem, primary and rare cell populations. (PubMed: 22422316)
- Cancer Cell (2012): aSIRTing Control over Cancer Stem Cells. (PubMed: 22340585)
- Proc Natl Acad Sci U S A (2012): beta-Arrestin2 mediates the initiation and progression of myeloid leukemia. (PubMed: 22773819)
- Genome Med (2011): Capturing Alzheimer’s disease genomes with induced pluripotent stem cells: prospects and challenges. (PubMed: 21867573)
- PLoS One (2011): Cell-surface marker signatures for the isolation of neural stem cells, glia and neurons derived from human pluripotent stem cells. (PubMed: 21407814)
- Tissue Eng Part A (2011): Decellularized Porcine Brain Matrix for Cell Culture and Tissue Engineering Scaffolds. (PubMed: 21883047)
- Hum Mol Genet (2012): Disruption and therapeutic rescue of autophagy in a human neuronal model of Niemann Pick type C1. (PubMed: 22437840)
- Am J Hum Genet (2010): Disruption of the podosome adaptor protein TKS4 (SH3PXD2B) causes the skeletal dysplasia, eye, and cardiac abnormalities of Frank-Ter Haar Syndrome. (PubMed: 20137777)
- Curr Protoc Stem Cell Biol (2012): Dopaminergic differentiation of human pluripotent cells. (PubMed: 22872424)
- Neurochem Res (2015): Effects of ATP and NGF on Proliferation and Migration of Neural Precursor Cells. (PubMed: 26233465)
- Cell Stem Cell (2013): Efficient generation of human iPSCs by a synthetic self-replicative RNA. (PubMed: 23910086)
- PLoS One (2013): Encodes Two Isoforms with Distinct Functions in Cancers. (PubMed: 24260410)
- Genes Dev (2011): Endogenous retroviruses and neighboring genes are coordinately repressed by LSD1/KDM1A. (PubMed: 21357675)
- Proc Natl Acad Sci U S A (2013): Engineering a BCR-ABL-activated caspase for the selective elimination of leukemic cells. (PubMed: 23324740)
- Genome Med (2012): The expanding world of stem cell modeling of Huntington’s disease: creating tools with a promising future. (PubMed: 22943447)
- Mol Cell (2011): Fine-tuning of Drp1/Fis1 availability by AKAP121/Siah2 regulates mitochondrial adaptation to hypoxia. (PubMed: 22099302)
- EMBO J (2015): Forward engineering neuronal diversity using direct reprogramming. (PubMed: 25908841)
- Proc Natl Acad Sci U S A (2011): Genetic correction and analysis of induced pluripotent stem cells from a patient with gyrate atrophy. (PubMed: 21464322)
- Cell (2013): Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics. (PubMed: 23602152)
- Mol Cell (2011): Genome-wide Regulation of 5hmC, 5mC, and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells. (PubMed: 21514197)
- Biomacromolecules (2010): Heparin mimicking polymer promotes myogenic differentiation of muscle progenitor cells. (PubMed: 21058638)
- Nat Commun (2016): High-resolution imaging and computational analysis of haematopoietic cell dynamics in vivo. (PubMed: 27425143)
- Am J Med Genet A (2012): A homozygous IER3IP1 mutation causes microcephaly with simplified gyral pattern, epilepsy, and permanent neonatal diabetes syndrome (MEDS). (PubMed: 22991235)
- Wiley Interdiscip Rev Syst Biol Med (2010): Human cardiomyogenesis and the need for systems biology analysis. (PubMed: 21197666)
- Stem Cells Dev (2013): Hypoxia and trophoblast differentiation: a key role for PPARgamma (PubMed: 23767827)
- Islets (2011): Id3 upregulates BrdU incorporation associated with a DNA damage response, not replication, in human pancreatic beta-cells. (PubMed: 21964314)
- Mol Cell (2011): Identification of a microRNA that activates gene expression by repressing nonsense-mediated RNA decay. (PubMed: 21596314)
- Proc Natl Acad Sci U S A (2012): Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cells. (PubMed: 22991473)
- Eur Cell Mater (2012): Injectable skeletal muscle matrix hydrogel promotes neovascularization and muscle cell infiltration in a hindlimb ischemia model. (PubMed: 22665162)
- Nat Methods (2012): Library-free methylation sequencing with bisulfite padlock probes. (PubMed: 22306810)
- Mol Cell (2012): LIN28 Binds Messenger RNAs at GGAGA Motifs and Regulates Splicing Factor Abundance. (PubMed: 22959275)
- Annu Rev Cell Dev Biol (2012): LINE-1 Retrotransposition in the Nervous System. (PubMed: 23057747)
- Nat Genet (2014): Lis1 regulates asymmetric division in hematopoietic stem cells and in leukemia. (PubMed: 24487275)
- Nature (2012): A map of the cis-regulatory sequences in the mouse genome. (PubMed: 22763441)
- Cell (2011): Modeling human disease in humans: the ciliopathies. (PubMed: 21962508)
- Placenta (2015): MTA3 regulates differentiation of human cytotrophoblast stem cells. (PubMed: 26198267)
- Annu Rev Cell Dev Biol (2015): Musashi signaling in stem cells and cancer. (PubMed: 26566113)
- Elife (2015): Nemo-like kinase is a novel regulator of spinal and bulbar muscular atrophy. (PubMed: 26308581)
- Neurochem Res (2015): Paraoxon and Pyridostigmine Interfere with Neural Stem Cell Differentiation. (PubMed: 25758980)
- Hum Pathol (2011): Placental expression of vascular endothelial growth factor receptor-1/soluble vascular endothelial growth factor receptor-1 correlates with severity of clinical preeclampsia and villous hypermaturity. (PubMed: 21334711)
- Cell Rep (2012): Pleiotrophin Regulates the Retention and Self-Renewal of Hematopoietic Stem Cells in the Bone Marrow Vascular Niche. (PubMed: 23084748)
- Nat Neurosci (2014): Polyglutamine-expanded androgen receptor interferes with TFEB to elicit autophagy defects in SBMA. (PubMed: 25108912)
- Nature (2012): Probing sporadic and familial Alzheimer’s disease using induced pluripotent stem cells. (PubMed: 22278060)
- Sci Rep (2013): Quantitative Transcriptomics using Designed Primer-based Amplification. (PubMed: 23624976)
- Cell Transplant (2015): Roles of kinins in the nervous system. (PubMed: 25839228)
- Nat Neurosci (2015): Selective conversion of fibroblasts into peripheral sensory neurons. (PubMed: 25420069)
- PLoS One (2010): Simple and high yielding method for preparing tissue specific extracellular matrix coatings for cell culture. (PubMed: 20885963)
- Nature (2011): Somatic coding mutations in human induced pluripotent stem cells. (PubMed: 21368825)
- Development (2012): A Sox9/Fgf feed-forward loop maintains pancreatic organ identity. (PubMed: 22874919)
- PLoS One (2011): Sox9-haploinsufficiency causes glucose intolerance in mice. (PubMed: 21829703)
- Exp Neurol (2012): Stem cells and modeling of autism spectrum disorders. (PubMed: 23036599)
- J Clin Invest (2010): T-cadherin is critical for adiponectin-mediated cardioprotection in mice. (PubMed: 21041950)
- J Clin Invest (2011): Tbx20 regulates a genetic program essential to adult mouse cardiomyocyte function. (PubMed: 22080862)
- Sci Rep (2014): Technical Variations in Low-Input RNA-seq Methodologies. (PubMed: 24419370)
- Mol Cell Biol (2014): TET2 plays an essential role in erythropoiesis by regulating lineage-specific genes via DNA oxidative demethylation in a zebrafish model. (PubMed: 24396069)
- PLoS One (2013): Use of a molecular genetic platform technology to produce human wnt proteins reveals distinct local and distal signaling abilities. (PubMed: 23516471)
- Proc Natl Acad Sci U S A (2011): In vivo demonstration that {alpha}-synuclein oligomers are toxic. (PubMed: 21325059)
- PLoS One (2013): Whole transcriptome sequencing enables discovery and analysis of viruses in archived primary central nervous system lymphomas. (PubMed: 24023918)
- Proc Natl Acad Sci U S A (2014): The WNT receptor FZD7 is required for maintenance of the pluripotent state in human embryonic stem cells. (PubMed: 24474766)
- Genes Dev (2012): Wnt signaling: the beta-cat(enin)’s meow. (PubMed: 22279043)