TSRI Center for hESC Research
Grant Award Details
Grant Type:
Grant Number:
CL1-00502-1.2
Investigator(s):
Human Stem Cell Use:
Award Value:
$3,725,070
Status:
Closed
Progress Reports
Reporting Period:
Year 1
Reporting Period:
Year 2
Reporting Period:
Year 3
Reporting Period:
Year 4
Reporting Period:
Year 5
Reporting Period:
Year 6
Grant Application Details
Application Title:
Center for hESC Research
Public Abstract:
The therapeutic use of stem cells in regenerative medicine will require the ability to control stem cell expansion and differentiation into specific tissue types, such as pancreatic ?-cells, heart tissue, bone or specific neuronal lineages. We have taken a chemical approach toward this problem in which large collections of synthetic small molecules are being screened in cell-based assays to identify drug-like molecules that control stem cell processes. Preliminary experiments in our institute have demonstrated that we can identify molecules that control the self-renewal and directed differentiation of murine embryonic stem cells. The characterization of the biological mechanisms of the molecules has also provided new insights into the underlying biology of stem cells. We now propose to extend these studies to hESC lines not eligible for federal funding, for which our research activities have been restricted to date. In addition, such lines may be better suited for specific applications, including the use of small molecules to derive specific cell lineages and investigate ES derived cell-based models of genetic disease. To this end, we would like to establish a human embryonic stem cell core facility. This facility will house the necessary equipment to genetically manipulate and culture hESCs on a large scale for a variety of studies including cell-based screens of small molecule libraries, as well as screens of arrayed genomic cDNA and siRNA libraries. We anticipate that this facility will serve our faculty as well as other labs that would like to collaboratively exploit this chemical approach to the study and manipulation of stem cells.
Statement of Benefit to California:
Historically, small molecules have been more useful than genetic approaches in the treatment of human disease. However, much of our ability to control embryonic stem cell self-renewal and directed differentiation currently involves genetic manipulation of these cells or complex mixtures of protein factors. The demonstration that one can systematically identify, optimize and characterize the mechanism of action of small drug-like molecules that selectively control stem cell biology both in vitro and in vivo will: (1) provide important tools to manipulate stem cells in the lab; (2) provide new insights into the complex biology that regulates stem cell differentiation; and (3) provide an important first step which may ultimately lead to drugs that facilitate the clinical application of stem cells.
Publications
- Neuro Oncol (2010): A 3-dimensional extracellular matrix as a delivery system for the transplantation of glioma-targeting neural stem/progenitor cells. (PubMed: 20156807)
- Genomics (2014): Application of a low cost array-based technique – TAB-Array – for quantifying and mapping both 5mC and 5hmC at single base resolution in human pluripotent stem cells. (PubMed: 25179373)
- Assessment of human pluripotent stem cells with PluriTest (PubMed: 23658970)
- Methods Mol Biol (2011): Basic approaches to gene expression analysis of stem cells by microarrays. (PubMed: 21822882)
- Nat Methods (2011): A bioinformatic assay for pluripotency in human cells. (PubMed: 21378979)
- Development (2013): BMP4-directed trophoblast differentiation of human embryonic stem cells is mediated through a DeltaNp63+ cytotrophoblast stem cell state. (PubMed: 24004950)
- Stem Cells Dev (2011): Chromatin Insulator Elements Block Transgene Silencing in Engineered hESC Lines at a Defined Chromosome 13 Locus. (PubMed: 21699412)
- Nat Methods (2012): Conversion of human fibroblasts to angioblast-like progenitor cells. (PubMed: 23202434)
- Sci Rep (2013): Deriving dopaminergic neurons for clinical use. A practical approach. (PubMed: 23492920)
- J Cell Biochem (2010): DNA methylation in embryonic stem cells. (PubMed: 19899110)
- Epigenomics (2015): DNA methylation fingerprint of neuroblastoma reveals new biological and clinical insights. (PubMed: 26067621)
- Cell Stem Cell (2011): Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture. (PubMed: 21211785)
- Genome Res (2010): Dynamic changes in the human methylome during differentiation. (PubMed: 20133333)
- Genome Res (2015): Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells. (PubMed: 26055160)
- Stem Cells Transl Med (2015): Enabling consistency in pluripotent stem cell-derived products for research and development and clinical applications through material standards. (PubMed: 25650438)
- Circ Res (2014): Epigenetic regulation of pluripotency and differentiation. (PubMed: 24989490)
- Ann Neurol (2014): Epigenetic therapy for Friedreich ataxia. (PubMed: 25159818)
- EMBO Rep (2012): Equally potent? Does cellular reprogramming justify the abandonment of human embryonic stem cells? (PubMed: 22986548)
- Trends Mol Med (2012): Ethnically diverse pluripotent stem cells for drug development. (PubMed: 23142148)
- Methods Mol Biol (2011): FISH analysis of human pluripotent stem cells. (PubMed: 21822876)
- Cell Stem Cell (2010): Friedreich’s ataxia induced pluripotent stem cells model intergenerational GAATTC triplet repeat instability. (PubMed: 21040903)
- Nat Biotechnol (2012): Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. (PubMed: 22820318)
- Nat Cell Biol (2012): The functions of microRNAs in pluripotency and reprogramming. (PubMed: 23131918)
- Methods Mol Biol (2015): Generation of Induced Pluripotent Stem Cells from Mammalian Endangered Species. (PubMed: 26621593)
- J Biol Chem (2014): Genomic instability in pluripotent stem cells: implications for clinical applications. (PubMed: 24362040)
- Tissue Eng Part A (2014): A global assessment of stem cell engineering. (PubMed: 24428577)
- Sci Rep (2015): Glycosyltransferase ST6GAL1 contributes to the regulation of pluripotency in human pluripotent stem cells. (PubMed: 26304831)
- Am J Bioeth (2010): Growth of an industry: how U.S. scientists and clinicians have enabled stem cell tourism. (PubMed: 20461650)
- Proc Natl Acad Sci U S A (2015): HDAC inhibition imparts beneficial transgenerational effects in Huntington’s disease mice via altered DNA and histone methylation. (PubMed: 25535382)
- Stem Cell Reports (2014): Human neural precursor cells promote neurologic recovery in a viral model of multiple sclerosis. (PubMed: 24936469)
- Development (2015): Human stem cells from single blastomeres reveal pathways of embryonic or trophoblast fate specification. (PubMed: 26483210)
- J Stem Cells (2010): Hyaluronan is required for generation of hematopoietic cells during differentiation of human embryonic stem cells. (PubMed: 20861924)
- PLoS One (2015): Increased risk of genetic and epigenetic instability in human embryonic stem cells associated with specific culture conditions. (PubMed: 25714340)
- Nat Methods (2011): Induced pluripotent stem cells from highly endangered species. (PubMed: 21892153)
- J Cell Sci (2013): Matched miRNA and mRNA signatures from an hESC-based in vitro model of pancreatic differentiation reveal novel regulatory interactions. (PubMed: 23813959)
- J Invest Dermatol (2013): Melanocytes derived from transgene-free human induced pluripotent stem cells. (PubMed: 23514962)
- Am J Bioeth (2010): A modest proposal in response to Rhodes and Schiano. (PubMed: 20131166)
- Brain (2017): Molecular analyses of neurogenic defects in a human pluripotent stem cell model of fragile X syndrome. (PubMed: 28137726)
- Nature (2014): Network biology: A compass for stem-cell differentiation. (PubMed: 25254472)
- Stem Cell Res Ther (2014): Neural stem cells genetically-modified to express neprilysin reduce pathology in Alzheimer transgenic models. (PubMed: 25022790)
- Proc Natl Acad Sci U S A (2009): Neural stem cells improve cognition via BDNF in a transgenic model of Alzheimer disease. (PubMed: 19633196)
- PLoS One (2011): Normal human pluripotent stem cell lines exhibit pervasive mosaic aneuploidy. (PubMed: 21857983)
- Elife (2015): A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics. (PubMed: 26102527)
- Nature (2012): Probing sporadic and familial Alzheimer’s disease using induced pluripotent stem cells. (PubMed: 22278060)
- Expert Rev Neurother (2014): Promoting remyelination: utilizing a viral model of demyelination to assess cell-based therapies. (PubMed: 25245576)
- Cell Res (2014): Protein post-translational modifications and regulation of pluripotency in human stem cells. (PubMed: 24217768)
- Cell Stem Cell (2012): Recurrent variations in DNA methylation in human pluripotent stem cells and their differentiated derivatives. (PubMed: 22560082)
- Science (2014): Research capacity. Enabling the genomic revolution in Africa. (PubMed: 24948725)
- Zoo Biol (2016): Rewinding the process of mammalian extinction. (PubMed: 27142508)
- Nat Commun (2014): Role of astroglia in Down’s syndrome revealed by patient-derived human-induced pluripotent stem cells. (PubMed: 25034944)
- Annu Rev Pharmacol Toxicol (2013): Small molecule-based approaches to adult stem cell therapies. (PubMed: 23294307)
- Cell Res (2011): Specific lectin biomarkers for isolation of human pluripotent stem cells identified through array-based glycomic analysis. (PubMed: 21894191)
- Stem Cells (2017): Spontaneous Single-Copy Loss of TP53 in Human Embryonic Stem Cells Markedly Increases Cell Proliferation and Survival. (PubMed: 27888558)
- Mov Disord (2015): Stem cell reprogramming: basic implications and future perspective for movement disorders. (PubMed: 25546831)
- Expert Opin Biol Ther (2015): The ‘sweet’ spot of cellular pluripotency: protein glycosylation in human pluripotent stem cells and its applications in regenerative medicine. (PubMed: 25736263)
- J Vis Exp (2011): Teratoma Generation in the Testis Capsule. (PubMed: 22158256)
- Bioessays (2016): The tumorigenic potential of pluripotent stem cells: What can we do to minimize it? (PubMed: 27417126)
- Nat Commun (2016): Whole-genome mutational burden analysis of three pluripotency induction methods. (PubMed: 26892726)